I have resolved the issue.

It seems that the problem was that the files that showed strange behavior had been encoded with Unicode Signature "Bit Object Marker" and Unicode Normalization Form: C.

When i used only Encoding UTF8 without the abowe in Dreamweaver.
The behavior stopped. I am a happy camper now :)

This problem was driving me crazy :)

Further Info (2010-11-02):
On further investigation it seems it was only the Unicode Signature "Bit Object Marker" that screwed up things for me.

I removed it and everything behaves the way it should.

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Of course the whole point of a doomsday machine, would have been lost if you keep it a secret.