It may not cover all of you criteria but its really good:

Eclipse PHP Development Tools - Eclipse PDT - Zend.com

download the 'all in one' package.

Its basically eclipse with PHP support and a Zend debugger built in (i.e. zend studio without the cruft and price tag).

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mysql> SELECT * FROM `users` WHERE `users`.`clue` > 0;
Empty set (0.00 sec)